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Genotyping, GWAS and genomic selection data Données génotypage, GWAS et sélection génomique
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1 to 10 of 34 Results
text/tab-separated-values - 21.7 MB - MD5: 0bacf886f4743cf1ab01389b216a8f05
50K Genotyping Matrix tabulated coded in allelic dose (012) filtered and imputed. Genotyping of 44 729 loci on 247 lines from Drops Association Panel were obtained using 50K Illumina Infinium HD arrays (Ganal et al., 2011). Genotype were coded in allelic dose (0,1,2). Genotype we...
text/tab-separated-values - 245.5 MB - MD5: 93999b63590a46b715fcf59dc8614b96
:600K Genotyping Matrix coded in allelic dose (012) filtered and imputed. Genotyping of 506,662 loci on 247 lines from Drops Association Panel were obtained using 600K Affymetrix Axiom arrays (Unterseer al., 2014). Genotype were coded in allelic dose (0,1,2). Genotype were filter...
text/tab-separated-values - 190.6 MB - MD5: bf13f364d727d4dbad893e8f3de191ac
GBS Genotyping Matrix coded in allelic dose (012) filtered and imputed. Genotyping of 506,662 loci on 247 lines from Drops Association Panel were obtained using 600K Affymetrix Axiom arrays (Unterseer al., 2014). Genotype were coded in allelic dose (0,1,2). Genotype were filtered...
text/tab-separated-values - 1.6 MB - MD5: 3840f9c440e825cf311049a8f1bd6aaa
Description of 44,729 loci genotyped by 50K Illumina Infinium Array on Drops Panel: Position on B73 reference genome (V2) and Correspondence between allele 0 and 2 in the Illumina Infinium HD genotyping matrix file and the original allele A, T, G, C using official clustering and...
text/tab-separated-values - 17.2 MB - MD5: 1a6bcbb11be770141ac9d3454b87660d
Description of 506,662loci genotyped by 600K Affymetrix Axiom Array on Drops Panel: Position on B73 reference genome (V2) and correspondence between allele 0 and 2 in the 600K genotyping matrix file and the original allele A, T, G, C, + (Insertion), - (Deletion) exported using Ax...
text/tab-separated-values - 12.6 MB - MD5: 6546dbb4fc11f79784671ff188d1a48f
Description of 395,024 loci genotyped by GBS on Drops Panel: Position on B73 refrence genome (V2) and correspondence for 395,024 loci between allele 0 and 2 in the GBS genotyping matrix file and the original allele A, T, G, C, + (Insertion), - (Deletion) from AllZeaGBSv2.7 export...
text/tab-separated-values - 12.8 KB - MD5: 73b844503ccf3501e4e2e835af328213
Description of 247 inbred lines (Accession name, seeds providers, and genetic groups)
text/tab-separated-values - 611.1 KB - MD5: e2b1d8ebeee70c141a73baa3722223fd
GWAS results: 4378 loci associated with a -log(p-value)>5 for flowering time (DTA), plant height (PlantHT), and yield (GY15) identified across 22 environments (Env). Three genotyping technologies used for genome-wide association studies were indicated in "Tech" columns (50K, 600K...
text/plain - 78.6 MB - MD5: a5cf3e374751f31afc2a42fd50fdcac4
List and description of deletions regarding B73 genome that are genotyped by Affymetrix Axiom Array. These deletions were discovered by aligning reads of F2, PH207, and C103 on B73 reference genome.
text/plain - 204.8 MB - MD5: ca8ca721cf4d6511876b2231fb31f8fc
List and description of insertions regarding B73 reference genome genotyped by Affymterix Axiom Array. Insertions were discovered by aligning reads of B73 genome on three draft genomes of PH207, F2 and C103.
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