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Genotyping, GWAS and genomic selection data Données génotypage, GWAS et sélection génomique
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1 to 10 of 34 Results
text/tab-separated-values - 12.8 KB - MD5: 73b844503ccf3501e4e2e835af328213
Description of 247 inbred lines (Accession name, seeds providers, and genetic groups)
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 11.8 MB - MD5: ca7cf56b3f363c9925c92c4fa9cf5893
Dataframe (482078 SNPs x 2 columns) with information on each SNP (chromosome and physical position in bp (B73 RefGen_v2))
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 43.5 KB - MD5: 0be4f936f44bc5f778cc931418611315
Dataframe (970 lines x 2 traits) phenotypic values of each line for male (MF) and female (FF) flowering time
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 12.9 KB - MD5: db5fe97a41150e5cd7196e9ffaedab71
Dataframe (366 lines x 2 parental origins) indicating the two parental lines used to generate each admixed line. Seven parental lines are not included in the dataset as they were not phenotyped (e.g. Dent_S1, Dent_S2, ... , Flint_S1)
text/tab-separated-values - 12.6 MB - MD5: 6546dbb4fc11f79784671ff188d1a48f
Description of 395,024 loci genotyped by GBS on Drops Panel: Position on B73 refrence genome (V2) and correspondence for 395,024 loci between allele 0 and 2 in the GBS genotyping matrix file and the original allele A, T, G, C, + (Insertion), - (Deletion) from AllZeaGBSv2.7 export...
text/tab-separated-values - 17.2 MB - MD5: 1a6bcbb11be770141ac9d3454b87660d
Description of 506,662loci genotyped by 600K Affymetrix Axiom Array on Drops Panel: Position on B73 reference genome (V2) and correspondence between allele 0 and 2 in the 600K genotyping matrix file and the original allele A, T, G, C, + (Insertion), - (Deletion) exported using Ax...
text/tab-separated-values - 1.6 MB - MD5: 3840f9c440e825cf311049a8f1bd6aaa
Description of 44,729 loci genotyped by 50K Illumina Infinium Array on Drops Panel: Position on B73 reference genome (V2) and Correspondence between allele 0 and 2 in the Illumina Infinium HD genotyping matrix file and the original allele A, T, G, C using official clustering and...
text/plain - 197.6 MB - MD5: f66173f16f60d5fdcb05542999ab4d1c
List and description of 662,722 probes on Affymetrix Axiom array. File contain flanking sequences of these probes, the indel genotyped by probes, the type of probes (OTV, MONO, BP).
text/plain - 204.8 MB - MD5: ca8ca721cf4d6511876b2231fb31f8fc
List and description of insertions regarding B73 reference genome genotyped by Affymterix Axiom Array. Insertions were discovered by aligning reads of B73 genome on three draft genomes of PH207, F2 and C103.
text/plain - 78.6 MB - MD5: a5cf3e374751f31afc2a42fd50fdcac4
List and description of deletions regarding B73 genome that are genotyped by Affymetrix Axiom Array. These deletions were discovered by aligning reads of F2, PH207, and C103 on B73 reference genome.
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