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Genotyping, GWAS and genomic selection data Données génotypage, GWAS et sélection génomique
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21 to 30 of 34 Results
text/tab-separated-values - 53.9 KB - MD5: 3e62a05f2b8a775f13a2a7a7198eb02b
This table (354 rows x 10 columns) describes the 354 accessions genotyped by three technologies in genotyping matrix. 10 columns indicates variety name (Variety_ID), accession name (Accession_ID), breeder that obtained inbred lines (Breeder), institution that provided initial see...
text/tab-separated-values - 54.9 MB - MD5: 94b810f814c543253133445d3ca13f8e
This table (978,134 rows x 8 columns) describes the 973,134 loci genotyped by one of three technologies on 354 accessions. Columns indicates the name of SNP (SNP.name), position of each loci on chromosome (Chromosome) and along each chromosomes in base pairs (Position) according...
text/tsv - 671.9 MB - MD5: db08c38de1cff98c135ef3408e10dd79
Genotyping matrix with inbred lines in row and markers in columns (354 rows x 978,135 columns). The first columns indicates the variety name. The header of genotyping matrix indicates names of markers. Genotyping data matrix were coded in allelic dose (0,1,2) and all markers is...
text/plain - 78.6 MB - MD5: a5cf3e374751f31afc2a42fd50fdcac4
List and description of deletions regarding B73 genome that are genotyped by Affymetrix Axiom Array. These deletions were discovered by aligning reads of F2, PH207, and C103 on B73 reference genome.
text/plain - 204.8 MB - MD5: ca8ca721cf4d6511876b2231fb31f8fc
List and description of insertions regarding B73 reference genome genotyped by Affymterix Axiom Array. Insertions were discovered by aligning reads of B73 genome on three draft genomes of PH207, F2 and C103.
text/plain - 197.6 MB - MD5: f66173f16f60d5fdcb05542999ab4d1c
List and description of 662,722 probes on Affymetrix Axiom array. File contain flanking sequences of these probes, the indel genotyped by probes, the type of probes (OTV, MONO, BP).
text/tab-separated-values - 611.1 KB - MD5: e2b1d8ebeee70c141a73baa3722223fd
GWAS results: 4378 loci associated with a -log(p-value)>5 for flowering time (DTA), plant height (PlantHT), and yield (GY15) identified across 22 environments (Env). Three genotyping technologies used for genome-wide association studies were indicated in "Tech" columns (50K, 600K...
text/tab-separated-values - 21.7 MB - MD5: 0bacf886f4743cf1ab01389b216a8f05
50K Genotyping Matrix tabulated coded in allelic dose (012) filtered and imputed. Genotyping of 44 729 loci on 247 lines from Drops Association Panel were obtained using 50K Illumina Infinium HD arrays (Ganal et al., 2011). Genotype were coded in allelic dose (0,1,2). Genotype we...
text/tab-separated-values - 245.5 MB - MD5: 93999b63590a46b715fcf59dc8614b96
:600K Genotyping Matrix coded in allelic dose (012) filtered and imputed. Genotyping of 506,662 loci on 247 lines from Drops Association Panel were obtained using 600K Affymetrix Axiom arrays (Unterseer al., 2014). Genotype were coded in allelic dose (0,1,2). Genotype were filter...
text/tab-separated-values - 190.6 MB - MD5: bf13f364d727d4dbad893e8f3de191ac
GBS Genotyping Matrix coded in allelic dose (012) filtered and imputed. Genotyping of 506,662 loci on 247 lines from Drops Association Panel were obtained using 600K Affymetrix Axiom arrays (Unterseer al., 2014). Genotype were coded in allelic dose (0,1,2). Genotype were filtered...
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