Skip to main content
Scheduled Maintenance – Data INRAE will be unavailable on thursday 07/29 from 12:00 to 14:00 (CEST) due to the deployment of a new version.
SelGen (www.inra.fr)
Genotyping, GWAS and genomic selection data Données génotypage, GWAS et sélection génomique
Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Find
Advanced Search

1 to 10 of 34 Results
text/tsv - 683.5 MB - MD5: adc4fcb77ad9e62231a3fe1d07e116f4
Training set with fluorescence intensity ratios (FIR) for 327 inbred lines on 32,788 prefixed PZE SNPs from 50K maize Illumina Array, used to test allele fixation in DNA bulks of landraces. Table display 5 columns: "ID.Genotypage", "SNP.Name",""Cas"","Attendu","RatioObs" These 5...
text/tab-separated-values - 1.3 MB - MD5: 3cfd55062ca797a3e6109a8270a42380
Training set of 1,000 SNPs and 24 controlled pools used to predict allelic frequencies for polymorphic SNPs using a common logistic regression after testing for fixation of alleles. Table have 4 columns with the following headers: "SNP.Name","Sample.ID","RatioObs","Attendu". Thes...
text/tab-separated-values - 40.3 MB - MD5: 4bc959b9571abdab7b789e0291fb3402
Fluorescence Intensity Ratios for 32,788 SNPs on 20 samples corresponding to 10 duplicated landraces. This table has 5 columns with headers as follows: "SNP.Name","Sample.name","X","Y", "RatioObs". These columns correspond to name of SNP, name of sample, fluorescence in...
text/x-r-source - 32.8 KB - MD5: 60ae0e0796cfd3f031c5f13ec84a2356
Functions to predict allelic frequencies using a two-step approache and to visualize prediction: Test of allele fixation, then logistic regression for polymorphic SNPs.
text/x-r-source - 6.0 KB - MD5: 90e666cd6d8619a15288e93046d9b58b
- R scripts (Pipeline) that apply R functions (04_Function_PredAllFreqInDNABulk_Publi.R) to two training datasets corresponding to fluorescence intensity data of 327 lines (1_Train_set_327lines_32788SNP.tsv ) and two series of controlled pools (2_Train_set_24pools_TF_1000SNP.tab)...
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 898.4 MB - MD5: 12ff7a95cb6b6ef2a14a7d33e82e4e56
Matrix (970 lines x 482078 SNPs) indicating the ancestry of each allele (0: flint genetic group, 1: dent genetic group)
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 19.5 KB - MD5: 4c4f4f3dcc5c2ac1e8004e31ac4d817f
Data.frame (970 lines x 1 genetic background) indicating the genetic background of the line (Dent, Flint or Admixed)
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 898.4 MB - MD5: 4058490721c4a281f42ad1e0c1bfab11
Genotyping matrix (970 lines x 482078 SNPs) with bi-allelic genotypic scores of each homozygous inbred line (coded 0/1)
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 23.9 MB - MD5: f92035ba949614e83e349b6ef09a7c70
Dataframe (247759 SNPs x 8 columns) with GWAS results obtained with model M1 (Dent) for female flowering (FF) on the set of SNPs conserved for analysis, including: SNP name, Chromosome, Physical position, Frequency of alleles 0 and 1, and the delta, Wald statistic and p-value o...
Feb 7, 2020 - FlintDent GWAS dataset
text/csv - 23.9 MB - MD5: 49a390a3e833e5e8e06efec6e282c928
Dataframe (247759 SNPs x 8 columns) with GWAS results obtained with model M1 (Dent) for male flowering (MF) on the set of SNPs conserved for analysis, including: SNP name, Chromosome, Physical position, Frequency of alleles 0 and 1, and the delta, Wald statistic and p-value of...
Add Data

Sign up or log in to create a dataverse or add a dataset.

Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.

Contact Portail Data INRAE Support

Portail Data INRAE Support

Please fill this out to prove you are not a robot.

+ =