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1 to 10 of 30 Results
Jul 30, 2021
Florian Maumus, 2021, "Clustered IMG VR v3 file: IMGVR70", https://doi.org/10.15454/RZDFOR, Portail Data INRAE, V1
How this file was created? All proteins (n=66,585,678) were retrieved from IMG/VR v3 database (https://genome.jgi.doe.gov/portal/IMG_VR/IMG_VR.home.html) version IMG_VR_2020-10-12_5.1 (https://doi.org/10.1093/nar/gkaa946). We used MMseqs2 (https://doi.org/10.1038/nbt.3988) for si...
Jul 9, 2021
Jonathan Kreplak; Grégoire Aubert; Magalie Leveugle; Hervé Duborjal; Jean-Philippe Pichon; Judith Burstin, 2021, "Exome capture genotyping data on the pea Architecture Multi-Stress collection (Peamust project)", https://doi.org/10.15454/3QRIPA, Portail Data INRAE, V1
In the context of Work Package 3 of the PeaMUST project , Genotyping data obtained by exome capture on a 240 accessions pea germplasm panel (AMS collection). You need an account to access data, contact urgi-support@inrae.fr and ask for Peamust project Exome capture genotyping dat...
May 18, 2021
Michotey, Celia; Fady, Bruno; Anger, Christel; Bastien, Catherine; Bastien, Jean-Charles; Chancerel, Emilie; Denou, Jean-Luc; Dowkiw, Arnaud; Ducousso, Alexis; Gauvrit, Christophe; Ienhuth, Bernard; Kremer, Antoine; Lefèvre, François; Muratorio, Sylvie; Pâques, Luc; Pastuszka, Patrick; Pichot, Christian; Plomion, Christophe; Puzos, Luc; Raffin, Annie; Rei, Franck; Santi, Frédérique; Severin, Laurent; Thevenet, Jean; Vauthier, Denis; Veisse, Dominique; Verger, Michel; Villar, Marc, 2021, "Datasets from common gardens of the Forest Genetics Network for Research and Experimentation (GEN4X)", https://doi.org/10.15454/50RS8C, Portail Data INRAE, V1
GEN4X (forest genetics network for research and experimentation) is a French network of forest tree common gardens which compare genetic units of varied types (species, sub-species, geographic origins, families, clones) across wide ranging environmental conditions. The initial ob...
May 17, 2021
Michotey, Celia; Vauthier, Denis; Fady, Bruno, 2021, "Phenotypic trait dataset of Pinus pinea measured in the common gardens of the Forest Genetics Network for Research and Experimentation (GEN4X)", https://doi.org/10.15454/MQKQ1O, Portail Data INRAE, V1
This dataset is composed of observations such as height, circumference, cone number, survival and forking, made until 2012 in 7 Pinus pinea provenance trials of the French common gardens network GEN4X (forest genetics network for research and experimentation). It makes possible t...
Feb 16, 2021
Michotey, Celia, 2021, "Plant Bioinformatics Facility data management plan", https://doi.org/10.15454/9HM5UI, Portail Data INRAE, V1
Data management plan of the Plant Bioinformatics Facility, hosted at URGI. Copyrights The creator(s) of this plan accept(s) that all or part of the text may be reused and personalized if necessary for another plan. You can cite this plan’s DOI as the source, but the use of any up...
Oct 21, 2020
LE CORRE Laurence; Charrier, Aurélie; Wagner, Marie-Hélène; Demilly, Didier; Ducournau, Sylvie; Dupont, Audrey; Hamdy, Sherif; Delanoue, Angélique; Dürr, Carolyne; Charruaud, Dorothée, 2020, "Morphological and physiological traits of sugar beet seeds from a wide genetic diversity", https://doi.org/10.15454/NF1GLG, Portail Data INRAE, V1
Dataset obtained by high throughput phenotyping of seed morphology, germination and seedling heterotrophic growth traits on sugar beet genotypes (2020-09-14)
Jul 30, 2020
Bernard, Anthony, 2019, "INRAE's Walnut Genotyping Resources", https://doi.org/10.15454/XPKII8, Portail Data INRAE, V3, UNF:6:/SFX1DUT4a/OUeP7cahAcg== [fileUNF]
Persian or English walnut (Juglans regia L.), the walnut species cultivated for nut production, is one of the oldest food sources known and is grown worldwide in temperate areas. In this work, genotyping resources have been developed for two works. Firstly, SSR genotyping has bee...
Feb 28, 2020
Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, Inês; Coppens, Frederik; Cornut, Guillaume; Costa, Bruno V.; Ćwiek-Kupczyńska, Hanna; Droesbeke, Bert; Finkers, Richard; Gruden, Kristina; Junker, Astrid; King, Graham J.; Krajewski, Paweł; Lange, Matthias; Laporte, Marie-Angélique; Michotey, Célia; Oppermann, Markus; Ostler, Richard; Poorter, Hendrik; Ramı́rez-Gonzalez, Ricardo; Ramšak, Živa; Reif, Jochen C.; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Scholz, Uwe; Tardieu, François; Uauy, Cristobal; Usadel, Björn; Visser, Richard G.F.; Weise, Stephan; Kersey, Paul J.; Miguel, Célia M.; Adam-Blondon, Anne-Françoise; Pommier, Cyril, 2020, "Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset", https://doi.org/10.15454/1YXVZV, Portail Data INRAE, V1
Exemplar dataset demonstrating the use of MIAPPE as described in "Enabling reusability of plant phenomic datasets with MIAPPE 1.1". Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardizing data publicatio...
Feb 28, 2020
Chaves, Inês; Miguel, Célia M.; Faria, Daniel; Costa, Bruno V., 2020, "Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset iBET", https://doi.org/10.15454/AH6U4A, Portail Data INRAE, V2
Spreadsheet file for the iBET cork oak dataset, accompanying the Enabling reusability of plant phenomic datasets with MIAPPE 1.1 paper
Feb 28, 2020
Michotey, Célia; Jorge, Véronique; Monclus, Romain, 2020, "Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp - Supplementary dataset", https://doi.org/10.15454/EASUQV, Portail Data INRAE, V1
Data sets in different formats for the related paper "Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp", doi: 10.1186/1471-2229-12-173 Spreadsheet: GNPIS_poplar_spreadsheet.xlsx ISA-T...
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