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application/vnd.realvnc.bed - 110.7 MB - MD5: 13e72da9866dca4147500ee5afe611e3
FruitBreedomics_apple_320K_SNP.bed: 320K genotyping matrix. Genotyping of 320,761 SNP loci on 1447 apple genotypes obtained using the Axiom®Apple480K array. Filtering of SNPs is described in the Supplementary_methods document associated with Jung et al (2020) and relied mainly on...
application/octet-stream - 9.5 MB - MD5: 8bb9baa0ec46e11cc63af66a03770ef2
FruitBreedomics_apple_320K_SNP.bim: description of the 320,761 SNP loci genotyped using the Axiom®Apple480K array: position on GDDH13 v1.1 reference genome (Daccord et al 2017) together with reference and alternative alleles.
application/octet-stream - 27.9 KB - MD5: 370f98057ff1fe58abfe00a2c6bea541
FruitBreedomics_apple_320K_SNP.fam: identifiers of apple genotypes, under the form of their Malus UNiQue genotype code (MUNQ) for the 1355 accessions or their within-progeny identifier for the 92 apple progeny individuals. The MUNQ codes are also listed in the dataset “MUNQ - Mal...
text/tab-separated-values - 133.2 KB - MD5: 9541600b34cb2dfd082f76e6c654bc83
FruitBreedomics_apple_material_description_v2.txt list of the 1447 unique Malus x domestica genotypes analyzed, with the name attributed to the MUNQ (MUNQ_Preferred_name), the ploidy level (Ploidy), the accession number of the accession used to represent the MUNQ in genotyping (A...
image/tiff - 114.8 KB - MD5: 28081ce388d3921c4e1d96b13d368a34
Outline of the files organisation and content
text/tab-separated-values - 30.3 KB - MD5: 6076c6ed02b139be027507cd040ef5d6
Raw SSR genotyping dataset related to 253 accessions from the INRAE's walnut germplasm collection
text/plain - 2.5 KB - MD5: d08dc3c76b2b8c8e8f451abd8ee643d7
Informations concerning the 13 SSR loci (type, source, primer sequence, repeat motif and reference)
text/rtf - 10.0 KB - MD5: db6f96d64656f873141775b029d7635b
text/tab-separated-values - 5.0 KB - MD5: aeef78a320c0f2722cc1a4891b45c74a
text/tab-separated-values - 687.6 KB - MD5: a949f1add6742328b8448b9fd14842d1
This file contains the environmental characterization of each Location × year combination. Based on the recorded weather, daily environmental variables were calculated. This file contains 30 columns: «year», «Site», «Env»: experiments ID with year of experiment («year»), locatio...
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