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cv_simul-data.Rmd

This file is part of "Scripts and data of the genetic analysis of Syrah x Grenache progeny".

Version 1.2
File Citation
Brault, Charlotte; Flutre, Timothée; Doligez, Agnès, 2021, "cv_simul-data.Rmd", Scripts and data of the genetic analysis of Syrah x Grenache progeny, https://doi.org/10.15454/NOUQY2/R73RES, Portail Data INRAE, V1
Dataset Citation
Brault, Charlotte; Flutre, Timothée; Doligez, Agnès, 2021, "Scripts and data of the genetic analysis of Syrah x Grenache progeny", https://doi.org/10.15454/NOUQY2, Portail Data INRAE, V1, UNF:6:cPuUhPCLt7WlQDM7mknnWA== [fileUNF]
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doi:10.15454/NOUQY2/R73RES
6ec5d16f6216055c18ca43a139dafdc9
2021-05-25
9.9 KB
text/x-r-markdown
This script creates simulated phenotypic values for two traits for the Syrah x Grenache progeny. It takes as input `SxG.allelic-effects.txt` with additive and dominance allelic effects with 3,961 SNP markers divided in allelic effects. It simulates multivariate phenotypic data (BLUPs) with same heritability value, for four configurations and four heritability values using the function SimulResponse from `Function4GenoClass.R`. This script is used with a bash script to create one script per configuration and simulation repetition. The simulated data are saved in "Rdata" format and in table with genotypic values (y) and true marker effect (B) for both responses and all heritability values (e.g. `same_minor_2.tsv` and `same_minor_2.Rdata` for same and minor configuration, repetition 2).
2020-10-05
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