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Parasitic transcriptome regulation in M. incognita (INRA - Institut National de la Recherche Agronomique)

This file is part of "Mapping of known effector genes on five Meloidogyne genomes".

Version 1.1
File Citation
Danchin, Etienne; Grynberg, Priscila, 2021, "DG-Minc-Table.docx", Mapping of known effector genes on five Meloidogyne genomes,, Portail Data INRAE, V1
Dataset Citation
Danchin, Etienne; Grynberg, Priscila, 2021, "Mapping of known effector genes on five Meloidogyne genomes",, Portail Data INRAE, V1
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Mapping of genes known to be specifically expressed in DG on the M. incognita genome and identification of corresponding predicted genes. Spaln spliced alignments of 34 non-redundant effector genes known to be specifically expressed in dorsal gland (DG) cells. One candidate effector (28B04) did not map on the genome. Columns are as follows: 1) arbitrary effector gene number; 2) effector gene name and synonym; 3) NCBI protein accession number; 4) M. incognita genome scaffold number; 5) M. incognita gene model accession number; 6) strand; 7-8) alignment start and end coordinates on the scaffold; 9) Query length; 10) percent identity; 11) percent coverage of query length; 12) start codon covered by the alignment; 13) reference. NA: not applicable.
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