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2b-FlorigenExpression_platform_BLUEsLevel.tab
Version 1.0
File Citation
Castelletti, Sara* (equal contribution); Coupel-Ledru, Aude* (equal contribution); Correia-Granato, Italo; Palaffre, Carine; Cabrera-Bosquet, Llorenç; Tonelli, Chiara; Nicolas, Stéphane; Tardieu, François; Welcker, Claude; Conti, Lucio, 2020, "2b-FlorigenExpression_platform_BLUEsLevel.tab", Flowering-related traits and florigen expression in a collection of maize inbred lines, https://doi.org/10.15454/XTHN7I/OBVKAV, Portail Data INRAE, V1, UNF:6:jPJdeI2KkUy681HQ4Ff+yw== [fileUNF]

This file is part of "Flowering-related traits and florigen expression in a collection of maize inbred lines".

Dataset Citation
Castelletti, Sara* (equal contribution); Coupel-Ledru, Aude* (equal contribution); Correia-Granato, Italo; Palaffre, Carine; Cabrera-Bosquet, Llorenç; Tonelli, Chiara; Nicolas, Stéphane; Tardieu, François; Welcker, Claude; Conti, Lucio, 2020, "Flowering-related traits and florigen expression in a collection of maize inbred lines", https://doi.org/10.15454/XTHN7I, Portail Data INRAE, V1, UNF:6:wVg54W5AlhQ3d8cmAt/XoQ== [fileUNF]
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File Metadata  
doi:10.15454/XTHN7I/OBVKAV
UNF:6:jPJdeI2KkUy681HQ4Ff+yw==
1a413d2121a0221e6d10657d3afd1466
2020-01-13
72.7 KB
text/tab-separated-values
11
603
This file contains the genotypic means (Best Linear Unbiased Estimation, BLUEs), with one value per experiment (year) per genotype, for the expression of the florigens in the platform. It contains two columns of identification of experiments and genotypes: «Experiment»: experiments ID described by the name of the platform (Phenoarch) followed by the year of the experiment. «Variety_ID»: genotype ID described in file «4-Info_Maize_variety» (other genotype IDs can be found in that file). It also contains nine columns with the genotypic means for nine levels of expression for four genes. In these nine columns, the column names are built as follows: gene name (‘CONZ’ for GRMZM2G405368, ‘ZNC7’ for GRMZM2G141756, ‘ZCN8’ for GRMZM2G179264, ‘ZCN12’ for GRMZM2G103666 ), followed by the developmental stage at which expression was measured (either ‘4’ for ligulated leaf 4, or ‘7’ for ligulated leaf 7), followed by the name of the housekeeping gene used to normalize the expression level (either ‘EF1’ for GRMZM2G153541 ELONGATION FACTOR 1 ALPHA, ‘UCe’ for GRMZM2G102471 UBIQUITIN-CONJUGATING ENZYME E2, or ‘ave’ for the average of both. Florigen expressions are –ΔCt values
2019-12-01
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